HMMerThread Database of remotely conserved domains

Bradshaw C. R., Surendranath V., Henschel R., Mueller M. and Habermann B. PLoS ONE, 2011 Mar 10;6(3):e17568

Search: Select Genome:    H. sapiens M. musculus D. melanogaster D. rerio C. elegans S. cerevisae S. pombe Enter Query (Gene Name) Enter Protein ID (or Clone ID for C.elegans) Enter Pfam Domain Include Sequence Based Domains (from Pfam) Include Non-Pfam Sequence Based Domains (from InterPro)

News This is a mirror of the HMMerThread Database at MPI-AGE http://hmmerthread.age.mpg.de HMMerThread DB Statistics: Genome Total Proteins Total Domain Hits Total Weak Hits (e > 1) Total Validated H. sapiens 33,466 23,151 12,038 1,031 (4,492) M. musculus 34,981 22,037 11,460 636 (3,541) C. elegans 23,518 13,709 7,664 (1,741) D. melanogaster 19,388 13,709 7,430 249 (1,075) D. rerio 29,720 23,251 11,422 (1,728) S. cerevisiae 5,868 3,117 1,919 41 (360) S. pombe 5,004 2,761 1,506 - D. discoideum 13,501 8,176 4,891 - TOTAL 165,446 109,570 58,330 1,957(12,937)

Developed at the MPI-CBG, Hosted at the Gurdon Institute Cambridge, UK